MUMmer

Category(ies): Bioinformatics

MUMmer3.0 is a joint development effort by Stefan Kurtz of the University of Hamburg and Adam Phillippy, Art Delcher and Steven Salzberg at the Center for Bioinformatics and Computational Biology at the University of Maryland.

Description:

MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. MUMmer can also align incomplete genomes.

altix: Not available

inQuiry: Not available

pcluster: Not available

rcluster, IOB: running program | Documentation | Installation | System

Running Program: also refer to submit jobs to queue at rcluster,IOB

e.x.

mapview [options] <coords file> [UTR coords] [CDS coords]
mummer -mum -b -c H_pylori26695_Eslice.fasta H_pyloriJ99_Eslice.fasta > mummer.mums
mummerplot -x "[0,275287]" -y "[0,265111]" -postscript -p mummer mummer.mums

Documentation:
For more information regarding the MUMmer3.0 package, please refer to the online manual or the documentation included with the source distribution.

Installation:

Source code downloaded from SourceForge
Compiled by gcc

System(s): Unix