ClustalW -- Multiple Sequence Alignments

Category(ies): Bioinformatics

Version: 1.8.3

Julie Thompson, Toby Gibson, European Molecular Biology Laboratory

Des Higgins, University of County Cork, Ireland

ClustalW is improving the sensitivity of progressive multiple sequence alignment
through sequence weighting, positions-specific gap penalties and weight matrix
choice.

altix: running program | Documentation | Installation | System

Running Program:

clustalw name.fasta

Result is at name.aln
Also please refer to

clustalw -options

Documentation:

more /usr/local/doc/clustalw/README
more /usr/local/doc/clustalw/clustalw.doc
clustalw -help

Installation:

Source code downloaded from http://www.cf.ac.uk/biosi/research/biosoft/Downloads/clustalw.html
Compiled by gcc

System(s): Unix

inQuiry: not available at inQuiry

pcluster: Not available on pcluster

rcluster,IOB: running program | Documentation | Installation | System

Running Program: also refer to submit jobs to queues at rcluster,IOB

e.x.

bsub -q queueName clustalw name.fasta

Result is at name.aln
Also please refer to

clustalw -options

Documentation: Same as altix

Installation: Same as altix

System(s): Unix