InterProScan is a tool that combines different protein signature recognition
methods into one resource. The number of signature databases and their associated
scanning tools, as well as the further refinement procedures, increases the
complexity of the problem.
Version 4.3.1 is at /usr/local/iprscan.v.4.3.1.U with DATA 16.2, PTHR_DATA 14.0. (Maxium input sequence is 50000)
Version 4.3.1 is at /usr/local/iprscan.v.4.3.1 with DATA 14.0, PTHR_DATA 14.0. (Maxium input sequence is 10000)
Version 4.2 is at /usr/local/iprscan.4.2
!! queue d4-10d is configured as the default queue of iprscan. There is no need to use queue submission for this application.
Documentation:
Standard data is downloaded and installed at /usr/local/iprscan.v.4.3.1.U/data
User manual is available at EBI
InterProScan Site
For help and options on the commandline, run /usr/local/iprscan.v.4.3.1/bin/iprscan -cli -h
or run more /usr/local/iprscan.v.4.3.1/README.txt
Installation: Binary from IPRScan home
During installation, configuration settings are:
The chunk size : 500
The maximum number of input protein sequences allowed :50000
The maximum number of input nucleic sequences allowed : 50000
The maximum length (in nucleic acids) for a nucleotide sequence : 100000
The minimum length (in amino acids) for a protein sequence : 5
The minimum allowed length of a translated orf : 50
The default codon table value to use to translate dna/rna in six frames : 0
Queueing system: lsf42
The name of the global queue: d4-10d
Follow programs used: Blastprodom,coils, gene3d, hmmpanther, hmmpir, hmmpfam, hmmsmart,hmmtigr, fprintscan, scanregexp,profilescan, superfamily, seg
Web interface is not set for public
/usr/local/iprscan.v.4.3.1.U/bin/iprscan -cli -i your-input-file -o your-output-file -email youremail@uga.edu -format raw -goterms -iprlookup
!! queue d4-10d is configured as the default queue of iprscan. There is no need to use queue submission for this application.